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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions ( ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs73201462 1 rs6785535 chr3:127834695 EEFSEC chr3:127872313-128127488:+ -0.25 -4.42 1.23E-5 Post bronchodilator FEV1;Post bronchodilator FEV1/FVC ratio
THCA cis rs12107539 1 rs6785930 chr3:151056616 GPR87 chr3:151011876-151034636:- 0.2 4.46 1.04E-5 Lung function (forced expiratory flow between 25% and 75% of forced vital capacity)
THCA cis rs12107539 1 rs6785930 chr3:151056616 P2RY14 chr3:150929905-150996230:- -0.18 -3.83 0.000144 Lung function (forced expiratory flow between 25% and 75% of forced vital capacity)
THCA cis rs7838490 1 rs67865942 chr8:89596642 MMP16 chr8:89049462-89339717:- 0.16 3.62 0.000324 Body mass index and cholesterol (psychopharmacological treatment)
THCA cis rs1552244 1 rs6786638 chr3:10118075 C3orf10 chr3:10157333-10168873:+ -0.21 -4.33 1.85E-5 Alzheimer's disease
THCA cis rs1552244 1 rs6786638 chr3:10118075 VHL chr3:10183319-10193744:+ -0.19 -4.41 1.28E-5 Alzheimer's disease
THCA cis rs6787172 1 rs6787172 chr3:158187811 LXN chr3:158384204-158390482:- 0.19 4.54 7.02E-6 Subjective well-being
THCA cis rs6787172 1 rs6787172 chr3:158187811 RARRES1 chr3:158414899-158450275:- 0.1 3.45 0.000616 Subjective well-being
THCA cis rs1031925 1 rs6787312 chr3:51650510 TEX264 chr3:51705222-51738338:+ -0.2 -5.49 6.64E-8 Melanoma
THCA cis rs10935120 1 rs6787371 chr3:134254991 ANAPC13 chr3:134196547-134204865:- 0.39 12.53 2.41E-31 Height
THCA cis rs10935120 1 rs6787371 chr3:134254991 CEP63 chr3:134204575-134293852:+ 0.3 6.59 1.14E-10 Height
THCA cis rs73201462 1 rs6787614 chr3:127817478 EEFSEC chr3:127872313-128127488:+ -0.25 -4.42 1.23E-5 Post bronchodilator FEV1;Post bronchodilator FEV1/FVC ratio
THCA cis rs344081 1 rs6787952 chr3:156609375 LEKR1 chr3:156544076-156763918:+ -0.55 -10.87 9.92E-25 Bone mineral density
THCA cis rs573521 1 rs678815 chr11:102713777 MMP1 chr11:102660641-102668966:- 0.25 4.53 7.34E-6 Cerebrospinal fluid levels of Alzheimer's disease-related proteins
THCA cis rs7631605 1 rs6789043 chr3:37025867 EPM2AIP1 chr3:37027358-37034795:- 0.13 3.88 0.000121 Cerebrospinal P-tau181p levels