GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
---|---|---|---|---|---|---|---|---|---|---|---|
THCA | cis | rs73201462 | 1 | rs6785535 | chr3:127834695 | EEFSEC | chr3:127872313-128127488:+ | -0.25 | -4.42 | 1.23E-5 | Post bronchodilator FEV1;Post bronchodilator FEV1/FVC ratio |
THCA | cis | rs12107539 | 1 | rs6785930 | chr3:151056616 | GPR87 | chr3:151011876-151034636:- | 0.2 | 4.46 | 1.04E-5 | Lung function (forced expiratory flow between 25% and 75% of forced vital capacity) |
THCA | cis | rs12107539 | 1 | rs6785930 | chr3:151056616 | P2RY14 | chr3:150929905-150996230:- | -0.18 | -3.83 | 0.000144 | Lung function (forced expiratory flow between 25% and 75% of forced vital capacity) |
THCA | cis | rs7838490 | 1 | rs67865942 | chr8:89596642 | MMP16 | chr8:89049462-89339717:- | 0.16 | 3.62 | 0.000324 | Body mass index and cholesterol (psychopharmacological treatment) |
THCA | cis | rs1552244 | 1 | rs6786638 | chr3:10118075 | C3orf10 | chr3:10157333-10168873:+ | -0.21 | -4.33 | 1.85E-5 | Alzheimer's disease |
THCA | cis | rs1552244 | 1 | rs6786638 | chr3:10118075 | VHL | chr3:10183319-10193744:+ | -0.19 | -4.41 | 1.28E-5 | Alzheimer's disease |
THCA | cis | rs6787172 | 1 | rs6787172 | chr3:158187811 | LXN | chr3:158384204-158390482:- | 0.19 | 4.54 | 7.02E-6 | Subjective well-being |
THCA | cis | rs6787172 | 1 | rs6787172 | chr3:158187811 | RARRES1 | chr3:158414899-158450275:- | 0.1 | 3.45 | 0.000616 | Subjective well-being |
THCA | cis | rs1031925 | 1 | rs6787312 | chr3:51650510 | TEX264 | chr3:51705222-51738338:+ | -0.2 | -5.49 | 6.64E-8 | Melanoma |
THCA | cis | rs10935120 | 1 | rs6787371 | chr3:134254991 | ANAPC13 | chr3:134196547-134204865:- | 0.39 | 12.53 | 2.41E-31 | Height |
THCA | cis | rs10935120 | 1 | rs6787371 | chr3:134254991 | CEP63 | chr3:134204575-134293852:+ | 0.3 | 6.59 | 1.14E-10 | Height |
THCA | cis | rs73201462 | 1 | rs6787614 | chr3:127817478 | EEFSEC | chr3:127872313-128127488:+ | -0.25 | -4.42 | 1.23E-5 | Post bronchodilator FEV1;Post bronchodilator FEV1/FVC ratio |
THCA | cis | rs344081 | 1 | rs6787952 | chr3:156609375 | LEKR1 | chr3:156544076-156763918:+ | -0.55 | -10.87 | 9.92E-25 | Bone mineral density |
THCA | cis | rs573521 | 1 | rs678815 | chr11:102713777 | MMP1 | chr11:102660641-102668966:- | 0.25 | 4.53 | 7.34E-6 | Cerebrospinal fluid levels of Alzheimer's disease-related proteins |
THCA | cis | rs7631605 | 1 | rs6789043 | chr3:37025867 | EPM2AIP1 | chr3:37027358-37034795:- | 0.13 | 3.88 | 0.000121 | Cerebrospinal P-tau181p levels |